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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:55:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_6719.
FX715105.1:188-205
GAAAAATGTAAAGGCCAGCTGTATAGCTAG188TAACGGGAAGTAAGCAATGTCTGCGTATAGTGCCTCTGTGCCTGTAAT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_59530.
FX773372.1:107-124
GAAAAATGTAAAGGCCAGCTGTATAGCTAG107TAACGGGAAGTAAGCAATGTCTGCGTATAGTGCCTCTGTGCCTGTAAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH039L17, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.
AC241126.1:46171-46188
AAAGAAGGTGAAAGCGAGCTGTATCGCTAG46171TAACGGGAAGTAAGCAATGTCTGCGTATAGAGCCTCTGTGCCTGTAAT
Brassica rapa subsp. pekinensis clone KBrH113K07, complete sequence.
CU914557.1:85952-85969
GAAAAATGTAAAGGCCAGCTGTATAGCTAG85952TAACGGGAAGTAAGCAATGTCTGCGTATAGTGCCTCTGTGCCTGTAAT
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:7215527-7215544
AAAGAAGGTGAAAGCGAGCTGTATCGCTAG7215527TAACGGGAAGTAAGCAATGTCTGCGTATAGAGCCTCAGTGCCTGTTAT
Thlaspi arvense genome assembly, chromosome: 7.
OU466863.1:8962263-8962280
GAAAAACGTAAAGGCGAGCTGTATAGCTAG8962263TAACGGGAAGTAAGCAATGTCTGCGTATAATGCCTCAGTGCCTGCAAA
Raphanus sativus genome assembly, chromosome: 4.
OY743210.1:5696578-5696595
GAAGAAGGTGAAAGCGAGCTGTATCGCTAG5696578TAACGGGAAGTAAGCAATGTCTGCGTATAGAGCCTCAGTGCCTGTTAT
Cochlearia excelsa genome assembly, chromosome: 1.
OY748327.1:41436725-41436742
AAAGAACGTAAAAGCGAGCTGTATAGCTCG41436725TAACGGGAAGTAAGCAATGTCTGCGTATAGCGCCTCAGTGCCTGTTAT
Acleris holmiana genome assembly, chromosome: 8.
OX438770.1:5936883-5936900
GAAATCCAAAAGGAGACAATTATCAATTTT5936883TAACGGGAAGTAAGCAATCTATAGCTATAATTACAAGCCTATTAGAGC
Sepiola atlantica genome assembly, chromosome: 5.
OY744519.1:79920702-79920719
AATTACTTAGCTTAAATATGTAAATAAGTA79920702TAACGGGAAGTAAGCAATATATCTAGCTTAATCTGACGAACGCACAGA
Sepia lycidas genome assembly, chromosome: 3.
OZ010573.1:39058246-39058263
TACCCTGGCATTTAGATCGCAGCTTGGTTG39058246TAACGGGAAGTAAGCAATGCAGACAAGTTTAATAATATATTTTGAAAA
Cylloceria caligata genome assembly, chromosome: 6.
OZ012708.1:41836972-41836989
TTATTTCATTTCAATCGTATAAATAGTAGA41836972TAACGGGAAGTAAGCAATACTACAAATATAATCTCACGAACGAGACAA
RS2DG52TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY938143.1:326-343
ATAACAGGCACTGAGGCACTATACGCAGAC326ATTGCTTACTTCCCGTTACTGGCCATACAGCTCGCTTTCACATTCTTT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_24158.
FX686206.1:693-710
ATAACAGGCACTGAGGCTCTATACGCAGAC693ATTGCTTACTTCCCGTTACTAGCGATACAGCTCGCTTTCACCTTCTTC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_24874.
FX742538.1:757-774
ATAACAGGCACTGAGGCTCTATACGCAGAC757ATTGCTTACTTCCCGTTACTAGCGATACAGCTCGCTTTCACCTTCTTC
TSA: Raphanus sativus RS04642 mRNA sequence.
JT789189.1:1010-1027
ATAACAGGCACTGAGGCTCTATACGCAGAC1010ATTGCTTACTTCCCGTTACTAGCGATACAGCTCGCTTTCACCTTCTTC
BOT01-95F3TF BOT01 Brassica oleracea genomic clone BOT01-95F3, genomic survey sequence.
FI748218.1:41-58
ATAACAGGCACTGAGGCTCTATACGCAGAC41ATTGCTTACTTCCCGTTACTAGCGATACAGCTCGCTTTCACCTTCTTT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB085J21, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.
AC232529.1:114657-114674
ATTACAGGCACAGAGGCTCTATACGCAGAC114657ATTGCTTACTTCCCGTTACTAGCGATACAGCTCGCTTTCACCTTCTTT
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:5731144-5731161
ATTACAGGCACAGAGGCACTATACGCAGAC5731144ATTGCTTACTTCCCGTTACTAGCGATACAGCTCGCTTTCACATTTTTC
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:24718498-24718515
ATTACAGGCACAGAGGCTCTATACGCAGAC24718498ATTGCTTACTTCCCGTTACTAGCGATACAGCTCGCTTTCACCTTCTTT
Brassica napus genome assembly, chromosome: A01.
HG994355.1:5965656-5965673
ATTACAGGCACAGAGGCACTATACGCAGAC5965656ATTGCTTACTTCCCGTTACTAGCTATACAGCTGGCCTTTACATTTTTC
Brassica napus genome assembly, chromosome: C07.
HG994371.1:48564148-48564165
ATAACAGGCACTGAGGCTCTATACGCAGAC48564148ATTGCTTACTTCCCGTTACTAGCGATACAGCTCGCTTTCACCTTCTTT
Brassica rapa genome, scaffold: A01.
LR031571.1:5800930-5800947
ATTACAGGCACAGAGGCACTATACGCAGAC5800930ATTGCTTACTTCCCGTTACTAGCGATACAGCTCGCTTTCACATTTTTC
Brassica rapa genome, scaffold: A03.
LR031572.1:24349043-24349060
ATTACAGGCACAGAGGCTCTATACGCAGAC24349043ATTGCTTACTTCCCGTTACTAGCGATACAGCTCGCTTTCACCTTCTTT
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:51334993-51335010
ATTACAGGCACAGAGGCTCTATACGCAGAC51334993ATTGCTTACTTCCCGTTACTAGCGATTCAGCTTGCTTTCACCTTCTTT
Raphanus sativus genome assembly, chromosome: 2.
LR778311.1:47953925-47953942
ATAACAGGCACTGAGGCTCTATACGCAGAC47953925ATTGCTTACTTCCCGTTACTAGCGATACAGCTCGCTTTCACCTTCTTC
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:5825249-5825266
ATTACAGGCACAGAGGCACTATACGCAGAC5825249ATTGCTTACTTCCCGTTACTAGCGATACAGCTCGCTTTCACATTTTTC
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:24476919-24476936
ATTACAGGCACAGAGGCTCTATACGCAGAC24476919ATTGCTTACTTCCCGTTACTAGCGATACAGCTCGCTTTCACCTTCTTT
Neobacillus sp. DY30 chromosome, complete genome.
CP126093.1:3616780-3616797
AATTAAGGAAACCATGCAACTGTGCCCCGG3616780ATTGCTTACTTCCCGTTAGAACACCACCCCTTAGACAAGTAGTTTGAA
Xestia c-nigrum genome assembly, chromosome: 8.
OU745251.1:13143107-13143124
AATGTCAGAAACACAATAGGTTTGGTATAC13143107ATTGCTTACTTCCCGTTACATCAAAATAGTTTTCGTAGAATTGTGTCA
Aporophyla lueneburgensis genome assembly, chromosome: 8.
OW028741.1:29760094-29760111
TTTTATAAGTTAATAAATAAATAAAAACTT29760094ATTGCTTACTTCCCGTTAACCAAGACAAGAAGCAAGGTATTCCATCAC
Drepana falcataria genome assembly, chromosome: 9.
OX243930.1:10926725-10926742
AATAACAACACAGAAGTGCAGATTATTAAT10926725ATTGCTTACTTCCCGTTAAAATTATCAAAATAATTCGTCACATTCCCT
Bicyclus anynana genome assembly, chromosome: 21.
OX359225.1:5128240-5128257
CACGTTGCTTGAATAAGCGTATACTTTGAA5128240ATTGCTTACTTCCCGTTAAATTGCTTAAATTTATTCTATTGATAGCTT
Argyresthia goedartella genome assembly, chromosome: 17.
OX463823.1:14365648-14365665
TCAATAATTATAGAAGAAGTATACTATATG14365648ATTGCTTACTTCCCGTTAAGTATTTTGAATTCGTAAAACTGACCGAGT
Melanotus villosus genome assembly, chromosome: 2.
OY720419.1:14527072-14527089
ATTTCAGTTGGCCTCACAAATAAGGGTATT14527072ATTGCTTACTTCCCGTTATACATACCCACTTGAGCAGGACAAATTGCC
Trididemnum clinides genome assembly, chromosome: 14.
OY776297.1:25811306-25811323
ATACAAAACAGGTGGGAAAATATTTGAGCA25811306ATTGCTTACTTCCCGTTACTAAAATTTTTTGTGCAAACACTTCTAAAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TAACGGGAAGTAAGCAAT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TAACGGGAAGTAAGCAAT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.165 | 0.156 | search_plus_done; http://172.18.8.135:50400/match?q=TAACGGGAAGTAAGCAAT&k=0&no_gap=0&offset=0&limit=50
0.428 | 0.263 | search_minus_done; http://172.18.8.135:50400/match?q=ATTGCTTACTTCCCGTTA&k=0&no_gap=0&offset=0&limit=38
0.444 | 0.016 | cgi_end;

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